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A pathway of targeted autophagy is induced by DNA damage in budding yeast.

Identifieur interne : 000938 ( Main/Exploration ); précédent : 000937; suivant : 000939

A pathway of targeted autophagy is induced by DNA damage in budding yeast.

Auteurs : Vinay V. Eapen [États-Unis] ; David P. Waterman [États-Unis] ; Amélie Bernard [États-Unis] ; Nathan Schiffmann ; Enrich Sayas [Suisse] ; Roarke Kamber [États-Unis] ; Brenda Lemos [États-Unis] ; Gonen Memisoglu [États-Unis] ; Jessie Ang [États-Unis] ; Allison Mazella [États-Unis] ; Silvia G. Chuartzman ; Robbie J. Loewith [Suisse] ; Maya Schuldiner ; Vladimir Denic [États-Unis] ; Daniel J. Klionsky [États-Unis] ; James E. Haber [États-Unis]

Source :

RBID : pubmed:28154131

Descripteurs français

English descriptors

Abstract

Autophagy plays a central role in the DNA damage response (DDR) by controlling the levels of various DNA repair and checkpoint proteins; however, how the DDR communicates with the autophagy pathway remains unknown. Using budding yeast, we demonstrate that global genotoxic damage or even a single unrepaired double-strand break (DSB) initiates a previously undescribed and selective pathway of autophagy that we term genotoxin-induced targeted autophagy (GTA). GTA requires the action primarily of Mec1/ATR and Rad53/CHEK2 checkpoint kinases, in part via transcriptional up-regulation of central autophagy proteins. GTA is distinct from starvation-induced autophagy. GTA requires Atg11, a central component of the selective autophagy machinery, but is different from previously described autophagy pathways. By screening a collection of ∼6,000 yeast mutants, we identified genes that control GTA but do not significantly affect rapamycin-induced autophagy. Overall, our findings establish a pathway of autophagy specific to the DNA damage response.

DOI: 10.1073/pnas.1614364114
PubMed: 28154131
PubMed Central: PMC5320992


Affiliations:


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Le document en format XML

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<keywords scheme="KwdEn" xml:lang="en">
<term>Autophagy (genetics)</term>
<term>Autophagy-Related Proteins (genetics)</term>
<term>Autophagy-Related Proteins (metabolism)</term>
<term>Cell Cycle Proteins (genetics)</term>
<term>Cell Cycle Proteins (metabolism)</term>
<term>Checkpoint Kinase 2 (genetics)</term>
<term>Checkpoint Kinase 2 (metabolism)</term>
<term>DNA Breaks, Double-Stranded (MeSH)</term>
<term>DNA Damage (MeSH)</term>
<term>DNA Repair (MeSH)</term>
<term>DNA, Fungal (genetics)</term>
<term>DNA, Fungal (metabolism)</term>
<term>Intracellular Signaling Peptides and Proteins (genetics)</term>
<term>Intracellular Signaling Peptides and Proteins (metabolism)</term>
<term>Protein-Serine-Threonine Kinases (genetics)</term>
<term>Protein-Serine-Threonine Kinases (metabolism)</term>
<term>Saccharomyces cerevisiae (genetics)</term>
<term>Saccharomyces cerevisiae (metabolism)</term>
<term>Saccharomyces cerevisiae Proteins (genetics)</term>
<term>Saccharomyces cerevisiae Proteins (metabolism)</term>
<term>Signal Transduction (genetics)</term>
<term>Vesicular Transport Proteins (genetics)</term>
<term>Vesicular Transport Proteins (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ADN fongique (génétique)</term>
<term>ADN fongique (métabolisme)</term>
<term>Altération de l'ADN (MeSH)</term>
<term>Autophagie (génétique)</term>
<term>Cassures double-brin de l'ADN (MeSH)</term>
<term>Checkpoint kinase 2 (génétique)</term>
<term>Checkpoint kinase 2 (métabolisme)</term>
<term>Protein-Serine-Threonine Kinases (génétique)</term>
<term>Protein-Serine-Threonine Kinases (métabolisme)</term>
<term>Protéines associées à l'autophagie (génétique)</term>
<term>Protéines associées à l'autophagie (métabolisme)</term>
<term>Protéines de Saccharomyces cerevisiae (génétique)</term>
<term>Protéines de Saccharomyces cerevisiae (métabolisme)</term>
<term>Protéines du cycle cellulaire (génétique)</term>
<term>Protéines du cycle cellulaire (métabolisme)</term>
<term>Protéines du transport vésiculaire (génétique)</term>
<term>Protéines du transport vésiculaire (métabolisme)</term>
<term>Protéines et peptides de signalisation intracellulaire (génétique)</term>
<term>Protéines et peptides de signalisation intracellulaire (métabolisme)</term>
<term>Réparation de l'ADN (MeSH)</term>
<term>Saccharomyces cerevisiae (génétique)</term>
<term>Saccharomyces cerevisiae (métabolisme)</term>
<term>Transduction du signal (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Autophagy-Related Proteins</term>
<term>Cell Cycle Proteins</term>
<term>Checkpoint Kinase 2</term>
<term>DNA, Fungal</term>
<term>Intracellular Signaling Peptides and Proteins</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Saccharomyces cerevisiae Proteins</term>
<term>Vesicular Transport Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Autophagy</term>
<term>Saccharomyces cerevisiae</term>
<term>Signal Transduction</term>
</keywords>
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<term>ADN fongique</term>
<term>Autophagie</term>
<term>Checkpoint kinase 2</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Protéines associées à l'autophagie</term>
<term>Protéines de Saccharomyces cerevisiae</term>
<term>Protéines du cycle cellulaire</term>
<term>Protéines du transport vésiculaire</term>
<term>Protéines et peptides de signalisation intracellulaire</term>
<term>Saccharomyces cerevisiae</term>
<term>Transduction du signal</term>
</keywords>
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<term>Autophagy-Related Proteins</term>
<term>Cell Cycle Proteins</term>
<term>Checkpoint Kinase 2</term>
<term>DNA, Fungal</term>
<term>Intracellular Signaling Peptides and Proteins</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Saccharomyces cerevisiae</term>
<term>Saccharomyces cerevisiae Proteins</term>
<term>Vesicular Transport Proteins</term>
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<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>ADN fongique</term>
<term>Checkpoint kinase 2</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Protéines associées à l'autophagie</term>
<term>Protéines de Saccharomyces cerevisiae</term>
<term>Protéines du cycle cellulaire</term>
<term>Protéines du transport vésiculaire</term>
<term>Protéines et peptides de signalisation intracellulaire</term>
<term>Saccharomyces cerevisiae</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>DNA Breaks, Double-Stranded</term>
<term>DNA Damage</term>
<term>DNA Repair</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Altération de l'ADN</term>
<term>Cassures double-brin de l'ADN</term>
<term>Réparation de l'ADN</term>
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<front>
<div type="abstract" xml:lang="en">Autophagy plays a central role in the DNA damage response (DDR) by controlling the levels of various DNA repair and checkpoint proteins; however, how the DDR communicates with the autophagy pathway remains unknown. Using budding yeast, we demonstrate that global genotoxic damage or even a single unrepaired double-strand break (DSB) initiates a previously undescribed and selective pathway of autophagy that we term genotoxin-induced targeted autophagy (GTA). GTA requires the action primarily of Mec1/ATR and Rad53/CHEK2 checkpoint kinases, in part via transcriptional up-regulation of central autophagy proteins. GTA is distinct from starvation-induced autophagy. GTA requires Atg11, a central component of the selective autophagy machinery, but is different from previously described autophagy pathways. By screening a collection of ∼6,000 yeast mutants, we identified genes that control GTA but do not significantly affect rapamycin-induced autophagy. Overall, our findings establish a pathway of autophagy specific to the DNA damage response.</div>
</front>
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<DateCompleted>
<Year>2018</Year>
<Month>04</Month>
<Day>24</Day>
</DateCompleted>
<DateRevised>
<Year>2019</Year>
<Month>06</Month>
<Day>10</Day>
</DateRevised>
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<Journal>
<ISSN IssnType="Electronic">1091-6490</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>114</Volume>
<Issue>7</Issue>
<PubDate>
<Year>2017</Year>
<Month>02</Month>
<Day>14</Day>
</PubDate>
</JournalIssue>
<Title>Proceedings of the National Academy of Sciences of the United States of America</Title>
<ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation>
</Journal>
<ArticleTitle>A pathway of targeted autophagy is induced by DNA damage in budding yeast.</ArticleTitle>
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<MedlinePgn>E1158-E1167</MedlinePgn>
</Pagination>
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<Abstract>
<AbstractText>Autophagy plays a central role in the DNA damage response (DDR) by controlling the levels of various DNA repair and checkpoint proteins; however, how the DDR communicates with the autophagy pathway remains unknown. Using budding yeast, we demonstrate that global genotoxic damage or even a single unrepaired double-strand break (DSB) initiates a previously undescribed and selective pathway of autophagy that we term genotoxin-induced targeted autophagy (GTA). GTA requires the action primarily of Mec1/ATR and Rad53/CHEK2 checkpoint kinases, in part via transcriptional up-regulation of central autophagy proteins. GTA is distinct from starvation-induced autophagy. GTA requires Atg11, a central component of the selective autophagy machinery, but is different from previously described autophagy pathways. By screening a collection of ∼6,000 yeast mutants, we identified genes that control GTA but do not significantly affect rapamycin-induced autophagy. Overall, our findings establish a pathway of autophagy specific to the DNA damage response.</AbstractText>
</Abstract>
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<Author ValidYN="Y">
<LastName>Eapen</LastName>
<ForeName>Vinay V</ForeName>
<Initials>VV</Initials>
<AffiliationInfo>
<Affiliation>Department of Biology, Brandeis University, Waltham, MA 02454.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Waterman</LastName>
<ForeName>David P</ForeName>
<Initials>DP</Initials>
<AffiliationInfo>
<Affiliation>Department of Biology, Brandeis University, Waltham, MA 02454.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Bernard</LastName>
<ForeName>Amélie</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109.</Affiliation>
</AffiliationInfo>
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<LastName>Schiffmann</LastName>
<ForeName>Nathan</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Genetics, Weizmann Institute of Sciences, Rehovot, Israel 7610001.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sayas</LastName>
<ForeName>Enrich</ForeName>
<Initials>E</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Biology, University of Geneva, CH-1211 Geneva 4, Switzerland.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Institute of Genetics and Genomics in Geneva, University of Geneva, CH-1211 Geneva 4, Switzerland.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Kamber</LastName>
<ForeName>Roarke</ForeName>
<Initials>R</Initials>
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</AffiliationInfo>
</Author>
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<LastName>Lemos</LastName>
<ForeName>Brenda</ForeName>
<Initials>B</Initials>
<AffiliationInfo>
<Affiliation>Department of Biology, Brandeis University, Waltham, MA 02454.</Affiliation>
</AffiliationInfo>
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<LastName>Memisoglu</LastName>
<ForeName>Gonen</ForeName>
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</Author>
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<LastName>Ang</LastName>
<ForeName>Jessie</ForeName>
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<AffiliationInfo>
<Affiliation>Department of Biology, Brandeis University, Waltham, MA 02454.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Mazella</LastName>
<ForeName>Allison</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Department of Biology, Brandeis University, Waltham, MA 02454.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Chuartzman</LastName>
<ForeName>Silvia G</ForeName>
<Initials>SG</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Genetics, Weizmann Institute of Sciences, Rehovot, Israel 7610001.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Loewith</LastName>
<ForeName>Robbie J</ForeName>
<Initials>RJ</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Biology, University of Geneva, CH-1211 Geneva 4, Switzerland.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Institute of Genetics and Genomics in Geneva, University of Geneva, CH-1211 Geneva 4, Switzerland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Schuldiner</LastName>
<ForeName>Maya</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Department of Molecular Genetics, Weizmann Institute of Sciences, Rehovot, Israel 7610001.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Denic</LastName>
<ForeName>Vladimir</ForeName>
<Initials>V</Initials>
<AffiliationInfo>
<Affiliation>Molecular and Cell Biology, Harvard University, Cambridge, MA 02138.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Klionsky</LastName>
<ForeName>Daniel J</ForeName>
<Initials>DJ</Initials>
<AffiliationInfo>
<Affiliation>Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Haber</LastName>
<ForeName>James E</ForeName>
<Initials>JE</Initials>
<AffiliationInfo>
<Affiliation>Department of Biology, Brandeis University, Waltham, MA 02454; haber@brandeis.edu.</Affiliation>
</AffiliationInfo>
</Author>
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<Language>eng</Language>
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<Grant>
<GrantID>R01 GM053396</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM121419</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM061766</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R37 GM020056</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM020056</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>T32 GM007122</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
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<Month>02</Month>
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<RegistryNumber>EC 2.7.11.1</RegistryNumber>
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<Chemical>
<RegistryNumber>EC 2.7.11.1</RegistryNumber>
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<MeshHeading>
<DescriptorName UI="D001343" MajorTopicYN="N">Autophagy</DescriptorName>
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<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<MeshHeading>
<DescriptorName UI="D053903" MajorTopicYN="Y">DNA Breaks, Double-Stranded</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D004249" MajorTopicYN="Y">DNA Damage</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D004260" MajorTopicYN="N">DNA Repair</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName>
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<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<Keyword MajorTopicYN="Y">ATM kinase</Keyword>
<Keyword MajorTopicYN="Y">ATR kinase</Keyword>
<Keyword MajorTopicYN="Y">DNA damage</Keyword>
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